jackknife variance estimation in r

This paper provides a brief account of some recent developments in variance estimation under single imputation that takes proper account of the variability due to estimating the missing values. the population mean. The jackknife only works well for linear statistics (e.g., mean). ˆ given . J . The leave-one out jackknife is used. The jackknife pre-dates other common resampling methods such as the bootstrap. Calculates jackknife variance or covariance estimates of regression coefficients. I'm using the following R code: Note that the Tukey jackknife variance estimator is not unbiased for the variance of regression coefficients (Hinkley 1977). A bias adjustment reduced the bias in the Bootstrap estimate and produced estimates of r and SE(r) almost identical to those ofthe Jackknife technique. The jackknife pre-dates other common resampling methods such as the bootstrap.Given a sample of size , a jackknife estimator can be built by aggregating the parameter estimates from each subsample of size () obtained by omitting one observation. This bias can become severe in contaminated data. Section 6 discusses the applicability of the delete-a-group jackknife variance estimator when the sample size is large and the population even larger. The jackknife method can be used for stratified sample designs and for designs with no stratification. When is estimated, the Horvitz-Thompson estimator is still used to estimate the variance of the parametric jack knife estimate. Supposeβˆ is the least squares estimate of β calculated from the data. The original (Tukey) jackknife variance estimator is defined as (g-1)/g ∑_ {i=1}^g (\tildeβ_ {-i} - \barβ)^2, where g is the number of segments, \tildeβ_ {-i} is the estimated coefficient when segment i is left out (called the jackknife replicates), and \barβ is the mean of the \tildeβ_ {-i}. Pedaada, S.D. Subject Index. Jackknife Resampling (Jacknifing) in statistics is a resampling technique especially useful for variance and bias estimation. Burke, J. and Rust, K. 1995. Like a pocket knife, this technique can be used as an easy to use and fast to calculate "quick . It is attractive as it merely involves deleting a unit and re-calculating the estimator. The Jackknife Estimate of Bias The Jackknife Estimate of Variance Bias of the Jackknife Variance Estimate The Bootstrap The Infinitesimal Jackknife The Delta Method and the Influence Function Cross-Validation, Jackknife and Bootstrap Balanced Repeated Replications (Half-Sampling) Random Subsampling Nonparametric Confidence Intervals. View source: R/jackknife.R. A jackknife estimator for this variance is analyzed in Section 3. Key words and phrases: Bootstrap, jackknife, regression, variance comparison. You can also control whether dots are displayed using set dots; see[R] set.nodots suppresses display of the replication dots. Using R for variance estimation in social surveys Eleanor Law, ONS. Doing so protects the privacy of survey participants while still allowing for accurate variance estimation. The jackknife method was originally proposed by Quenouille (1949). Lee, E. S., Forthofer, R. N., & Lorimor, R. J. 2. does not track the conditional variance of . −1) s . jackknife estimator of the variance of the Hodges-Lehmann estimator are about 50 times as fast as the bootstrap variance estimator with B = 100. If your design is stratified, the jackknife method requires at least two PSUs in each stratum. Tukey (1958) noticed that the approach also led to a method for estimating variances. Confidence intervals for the Jackknife variances were constructed and were used to obtain coverage probabilities for MLE and UMVUE of f(x; k, θ) using R program. This is repeated for each replicate stratum, squaring and then summing the result. An important feature of geeglm, is that an anova method exists for these models. A general jackknife estimator for the asymptotic covariance of moment estimators is considered in the case when the sample is taken from a mixture with varying concentrations of components. The total number of replicates R is the same as the total number of PSUs. A cross-validated model fitted with jackknife = TRUE. To make the method easy to modify for other statistics, I've written a function called EvalStat which computes the correlation coefficient. If \code {TRUE} (default), the mean coefficients #' are used when estimating the (co)variances; otherwise the coefficients from #' a model fitted to the entire data set. #' @description Calculates jackknife variance or covariance estimates of regression #' coefficients. That is, theta applied to x with the 1st observation deleted, theta applied to x with the 2nd observation deleted, etc. A ratio estimate is computed for this modified sample and compared with the original estimate. NAEP Technical Documentation Replicate Variance Estimation. Jackknife estimator is considered to be better than MLE, but somehow I get the same numbers. Although this method has a long history of application, the problem of variance estimation after nearest-neighbor imputation has not been He invented the name "jackknife". Two bootstrap methods for variance estimation are considered. When you specify the VARMETHOD=JACKKNIFE option, PROC SURVEYFREQ uses the delete-1 jackknife method for variance estimation. Campbell's generalized jackknife variance estimator. The jackknife was developed by Quenouille (1949, 1956) as a general method to remove bias from estimators. Consistency of least-squares estimator and its jackknife variance estimator in nonlinear models. 2.1 Variance PSUs and Variance Strata There are two basic approaches to estimation of the variance for survey data: the Taylor linearization method and the resampling method. Password. 1. We opt for the following compromise. When the estimation methodology is relatively simple (e.g., a one-stage ratio estimation), linearization variance estimators can yield very close approximations to their stratified jackknife counterparts. (B.3) N . The resampling method includes the jackknife, balanced repeated replication (Fay's method as a variant), and bootstrap methods. The jackknife method of variance estimation deletes one PSU at a time from the full sample to create replicates. This package provides jackknife resampling and estimation functions for Julia. Jackknife Variance Estimation for Two Samples after Imputation under Two-Phase Sampling Jackknife Background † Introduced by Quenouille (1949, 1956) as a method to reduce bias † Popularized by Tukey (1958) who used it for variances and CIs † Arvesen (1969) was the first to propose two-sample jackknife estimator 2004 JSM , August 11 3 John Tukey then expanded the use of the jackknife to include variance estimation and tailored the geeglm has a syntax similar to glm and returns an object similar to a glm object. jack.values The n leave-one-out values of theta, where n is the number of observations. Since that time, the jackknife has been used more for variance estimation than for bias estimation. Jackknife Estimation • The jackknife (or leave one out) method, invented by Quenouille (1949), is an alternative resampling method to the bootstrap. (1989). In statistics, the jackknife is a resampling technique that is especially useful for bias and variance estimation. Subject Index. • The method is based upon sequentially deleting one observation from the dataset, recomputing the estimator, here, , n times. Resampling variance estimation for complex survey data Stanislav Kolenikov University of Missouri Columbia, MO kolenikovs@missouri.edu Abstract. The geeglm function fits generalized estimating equations using the 'geese.fit' function of the 'geepack' package for doing the actual computations. The jackknife estimator of a parameter is found by systematically leaving out each observation from a sample and calculating the estimate and then finding the average of . The jackknife is a method used to estimate the variance and bias of a large population. The jackknife method of variance estimation deletes one PSU at a time from the full sample to create replicates. A naive variance estimator for the variance of (2), based on the jackknife, is given by: n-I vj(1) -- ~ (~-(- k) - ~-)~ (3) n kes where y(- k) ~ 1 (ny - Y.k) (4) (n-l) Jackknife and Bootstrap Methods of Variance Estimation bootstrap is applied to the sample data yhi n h i 1 in each stratum, then the resulting resampling algorithm would take the following form: (i) Draw a simple random sample hi n y* i h1 with replacement from the original sample yhi h n Bootstrap & Jackknife Variance Estimates. Given a sample of size , a jackknife estimator can be built by aggregating the parameter estimates from each subsample of size We will discuss the jackknife further in sections 2 and 4. The jackknife predates other common resampling methods such as the bootstrap. The Canadian Journal of Statistics 20: 415 - 428 51. Here . In Rao, C. R. , Royall and Cumberland (1981) showed that a commonly used linearization variance estimator . 1993. Section 4 concentrat es on the special case of a tw o-pha se r egres sion est imat or in projec ti on for m. Some empirical results for the weighted expansion esti mator part iall y publi shed in Stukel and Ko tt (1997) are reviewed in light of this analysis. Finally, Section 7 offers a broader discussion of the topics covered in the text. In general, the jackknife replicate variance procedure involves pairing clusters of . When is known, the variance of is estimated by the Horvitz-Thompson estimator (Sarndal et al., 1992, p. 43): where and G are given above, = joint inclusion probabili ty for selecting elements i and j from population U. However, it still suffers from a large bias. estimation. In statistics, the jackknife is a resampling technique that is especially useful for bias and variance estimation. 2 (n. −1 . In general, our simulations show that the Jackknife will provide more cost-effective point and interval estimates of r for cladoceran I'm trying to estimate distribution parameters with Maximum Likelihood Estimator (MLE) and Jackknife estimator based on it. If TRUE (default), the mean coefficients are used when estimating the (co)variances; otherwise the coefficients from a model fitted to the entire data set. Finally, in Section 2.5, the variance estimation formulas for the jackknife and BRR are presented. The aim is to estimate Vn = E(βˆ−β)(βˆ−β)T, the dispersion of the least squares estimator. Jackknife Estimation: The jackknife is an alternative to BRR that is not restricted to cases where the number of PSUs per stratum equals two. and 1.8%, respectively. The jackknife is an alternative resampling scheme used for bias correction and variance estimation that predates the bootstrap. Giving the approximate 95% jackknife confidence interval as 0.150 to 0.372. A simple example is given to show that they do not, in general, give unbiased variance estimators even in the equal variance case. call The deparsed call References (B.2) n — 1 ^^ ¿=ι For large n, the jackknife estimate is approximately normally distributed about the true parameter Θ. As a result, when this jackknife is applied to estimators from the NASS area frame, it will be biased upward. Sign In. Introduction Consider the linear regression model given by y(n×1) = X(×p)β( 1)+e(. Extensions of the results to R-estimators in the linear model context are discussed. It fails to give accurate estimation for non-smooth (e.g., median) and nonlinear (e.g., correlation coefficient) We develop a jackknife variance estimator which is robust with #' @param ncomp the number of components to use for estimating the variances #' @param use.mean logical. The jackknife estimate of bias of theta . Variance Estimate 200 500 1000 2000 Jackknife Inf. . The variance of these pseudovalues is the estimate of the variance of Θ: Varifi) = —ί-Υΐθ-i-θ 0)2. Sufficient conditions are given for the consistency of the jackknife variance estimator for R-estimators of location in the one- and two-sample problems. The jackknife replicates are created by dropping a single PSU at a time and estimating the . The (Monte-Carlo approximation to) the bootstrap estimate of ˙ n(F) is v u u tB 1 XB j=1 [ˆb j ˆ]2: Finally the jackknife estimate of ˙ n(F) is v u u tn 1 n Xn j=1 [bˆ (i) bˆ ()]2; see the beginning of section 2 for the notation used here. In pls: Partial Least Squares and Principal Component Regression. In Section 4.1, we investigate the use of the delete-one jackknife for estimating the variance of the model-based estimator and establish consistency results. The bias depends on the \(X\) matrix. They also compared the performance of Campbell's jackknife in a single stage context with standard single stage jackknife such as in Kish and Frankel(1974). The resampling method calls for creation of many replicate samples . Formula (5) then simplifies to ˆ(ˆ2 Jackknife r r V=∑R−Rˆ) (6) where is the ratio estimate based on the student sampling weights of replicate stratum r in which . Hence Jackknife mean of MLE / UMVUE will be obtained as where R is the number of runs for each sample size. In particular, the jackknife is shown to. A 95% confidence interval for Θ can be estimated as e±lMy/Var(e). We show that a "one-step" jackknife estimator of variance is asymptotically equivalent to the variance estimator proposed by White. THE JACKKNIFE ESTIMATE OF VARIANCE OF A KAPLAN{MEIER INTEGRAL1 By Winfried Stute University of Giessen Let FO n be the Kaplan{Meier estimator of a distribution function F computed from randomly censored data. Jackknife-U Figure3: Performance, as a function of B, of the jackknife and IJ estimators and their It involves a leave-one-out strategy of the estimation of a parameter (e.g., the mean) in a data set of N observations (or records). Jackknife variance estimation and bias reduction. Also, Berger(2007) modified Campbell's estimator by proposing a simple jackknife variance estimator. In each replicate, the sample weights of the remaining PSUs are modified by the jackknife coefficient . Y. This technique is applicable for common statistics such as means and ratios as well as for more complex statistics such as Item Response Theory (IRT) scores.. The jackknife estimator of a parameter is found by systematically leaving out each observation from a dataset and calculating the estimate and . Cancel. the other extreme is to jack.knife nV n,s its variance, and equate that estimate to in order to obtain an estimate of 2n 2v t d, which is the n,s estimated variance of o 2 2 xd .-.. d. The latter approach is more in the spirit of the jackknife, but clearly would lead to complicated calculation in practice. or explicitly import them. It is known that, under certain integrabilityR assumptions on a function ', the Kaplan{Meier integral . In particular, work on jackknife and That is, there are exactly n jackknife estimates obtained in a . The jackknife is a commonly used technique to estimate variance which is easy to implement. ed., Handbook of Statistics 9: 723 - 744 52. There are two basic approaches to estimation of the variance for survey data: the Taylor linearization method and the resampling method. Each function takes the following two arguments: A point estimator, given as a Function. ncomp: the number of components to use for estimating the variances. Background Suppose we want to estimate a population (U) total, T = 3 U y k based on a sample (S . The variance estimator vt, r (4.1) is extended to this situation. Sign In. 10/05/17 - Samples with a common mean but possibly different, ordered variances arise in various fields such as interlaboratory experiments, . y. and . variance it is measuring. object: an mvr object. The total number of replicates R is the same as the total number of PSUs. 2000 AMS Classi cation: 62 D05 1. White (1982, Econometrica 50, 1-26) proposed a variance estimator for beta that is robust to model misspecification. estimating the unknown missing values is not taken into account. Description. 2. For each sample of size 20, we compute the jackknife 95% confldence (3) for the variance, and count the number of samples out of 10,000 for which the jackknife 95% confldence interval contains the true variance, which is 0.048 in this case. Forgot your password? Here's a summary of the various estimated values, variances, and confidence intervals Method Estimated CV Variance 95% interval Original Estimate 0.252 Jackknife 0.262 0.0029 0.150 - 0.373 Bootstrap 0.264 0.0019 Bootstrap (normality) 0.178 - 0.351 An . Username or Email. Let Var(qb) be the variance or asymptotic variance of an estimator qb. The Jackknife Variances of MLE and UMVUE are given as follows. Jackknife estimator, Variance estimation, Varying probability sampling. x~ -- (1/m)~r xk" Consider first variance estimation for sampling from an infinite population, or one with negligible sampling fraction. Parametric Bootstrap Methods Jackknife Herv¶e Abdi ⋅ Lynne J. Williams 1 Introduction The jackknife or \leave one out" procedure is a cross-validation technique flrst developed by Quenouille to estimate the bias of an estimator. the jackknife estimator by having a lower Monte Carlo variance, and needs 1.7 times less . Traditional jackknife theory focuses on two particular choices of R. Let O(F) be some parameter of interest such as the mean, correlation, or standard deviation of F, and t(X) be an estimator of O(F), such as the sample mean, sample correlation, Jackknife.jl. #' #' The original (Tukey) jackknife variance estimator is defined as \eqn { (g-1)/g #' \sum_ {i=1}^g (\tilde\beta_ {-i} - \bar\beta)^2}, where \eqn {g} is the number #' of segments, \eqn {\tilde\beta_ {-i}} is the estimated coefficient when Like the delete-one jackknife, the delete-a-group jackknife is a nearly unbiased estimator of variance only when the first-phase sampling fractions are small ) no more than 1/5 for most records. jackknife— Jackknife estimation 5 any value in exp list is missing. Variances for NAEP estimates are computed using the jackknife replication variance procedure. θ = (μ,σ)′ θ = ( μ, σ) ′ ), and let ^θ θ ^ denote the plug-in estimate of θ θ.

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